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SReD


GitHub:
- HenriquesLab/SReD

Publication: Mendes et al. bioRxiv 2024
- 0

SReD (Structural Repetition Detector) is an ImageJ and Fiji plugin for analyzing structural repetition in microscopy images. It introduces a novel approach utilising a custom sampling scheme and correlation metrics to compute Repetition Maps. These maps highlight and quantify the degree of structural repetition present within images, providing valuable insights for image analysis and structural studies.


Publications featuring SReD

Structural Repetition Detector - multi-scale quantitative mapping of molecular complexes through microscopy
Afonso Mendes, Bruno M Saraiva, Guillaume Jacquemet, Joao I Mamede, Christophe Leterrier, Ricardo Henriques
Preprint published in bioRxiv, September 2024
Technologies: CARE, Nuclear-Pores as references and SReD
Funded by: CZI, EMBO, ERC, H2021 and H2022
DOI: 10.1101/2024.09.16.613204